Chemotaxis in Rhodobacter sphaeroides: A Feasibility Study
Revision as of 16:18, 15 January 2008 by Antonis
Research is supported by EPSRC project E05708X
Recent years have seen the application of mathematical modelling to an increasing number of problems in the biological and medical sciences. A mathematical model can represent an ecosystem, an organ, a cell, or the kinetic reaction between molecules. It can provide useful insights into the dynamics of biological systems and, importantly, guide the scientists who might be overwhelmed by the complexity of their research objects. Many biological processes involve crosstalk and feed-back loops generating complex networks rather than simple linear pathways.
Obtaining the topological structure of such networks is important for understanding the mechanism through which robust system functionally is maintained. High throughout experiments now provide a wealth of data that can be used to determine biochemical network structure and to propose mechanistic rate laws with appropriate kinetic parameter values. However, no unique network can account for these data, and the systematic design of new experiments based on current knowledge is essential for further delineating network structure. A synergy between mathematical modelling, control theory and experiment design is therefore fundamental for increasing physiological and biochemical knowledge.
Bacterial chemotaxis is the biasing of movement towards regions of higher concentration of beneficial or lower concentration of toxic chemicals. In bacteria such as E. coli and R. sphaeroides, this is achieved when chemical ligands bound to membrane-spanning receptors initiate a signalling cascade of intracellular protein activity leading to the change in activity of the flagellar motor which drives the extracellular flagellum (or flagella), causing the bacterium to move. Chemotaxis in E. coli is one of the best understood pathways in biology and there is a large amount of experimental data on structures, kinetics, in vivo protein concentrations and localisation. This relatively simple pathway has helped to conceptualise the signalling pathway of sensory systems in general. However, with an increasing number of sequenced bacterial genomes it becomes evident that the chemotactical sensory mechanism of many other bacteria is much more complex.
Working model of the Rhodobacter sphaeroides chemotaxis signal transduction pathway