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| − | We provide here the code that was used to model order reduce the networks in the paper 'A systematic, algorithmic methodology for model reduction of large-scale biochemical networks' by Yo-Cheng Chang and Antonis Papachristodoulou.
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| − | =The Yeast Glycolysis Pathway=
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| − | One zip file containing:
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| − | The SIMULINK model: YGlyco_mdl.mdl
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| − | The S-function: YGlyco_sfun.mdl
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| − | The Parameters: YGlyco_para.m
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| − | The vector field: YGlyco_eqs.m
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| − | The ODE function: YGlycoode.m
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| − | The reduction algorithm: YGlyco_reduction.m
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| − | The system coordinate change function: findtransform.m
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| − | The norm coordinate change function: getQ.m
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| − | =The EGFR-MAPK Pathway=
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| − | One zip file containing:
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| − | The SIMULINK model: EGFRMAPK_mdl.mdl
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| − | The S-function: EGFRMAPK_sfun.mdl
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| − | The Parameters: EGFRMAPK_para.m
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| − | The total concentrations: EGFRMAPK_init.m
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| − | The ODE function: EGFRMAPKode.m
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| − | The reduction algorithm: EGFR_reduction.m
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| − | The system coordinate change function: findtransform.m
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| − | The norm coordinate change function: getQ.m
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