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−  We provide here the code that was used to model order reduce the networks in the paper 'A systematic, algorithmic methodology for model reduction of largescale biochemical networks' by YoCheng Chang and Antonis Papachristodoulou.
 
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−  =The Yeast Glycolysis Pathway=
 
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−  One zip file containing:
 
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−  The SIMULINK model: YGlyco_mdl.mdl
 
−  The Sfunction: YGlyco_sfun.mdl
 
−  The Parameters: YGlyco_para.m
 
−  The vector field: YGlyco_eqs.m
 
−  The ODE function: YGlycoode.m
 
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−  The reduction algorithm: YGlyco_reduction.m
 
−  The system coordinate change function: findtransform.m
 
−  The norm coordinate change function: getQ.m
 
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−  =The EGFRMAPK Pathway=
 
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−  One zip file containing:
 
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−  The SIMULINK model: EGFRMAPK_mdl.mdl
 
−  The Sfunction: EGFRMAPK_sfun.mdl
 
−  The Parameters: EGFRMAPK_para.m
 
−  The total concentrations: EGFRMAPK_init.m
 
−  The ODE function: EGFRMAPKode.m
 
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−  The reduction algorithm: EGFR_reduction.m
 
−  The system coordinate change function: findtransform.m
 
−  The norm coordinate change function: getQ.m
 