# Difference between revisions of "Modelreduction"

### From SYSOS

(New page: We provide here the code that was used to model order reduce the networks in the paper 'A systematic, algorithmic methodology for model reduction of large-scale biochemical networks' by Y...) |
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We provide here the code that was used to model order reduce the networks in the paper 'A systematic, algorithmic methodology for model reduction of large-scale biochemical networks' by Yo-Cheng Chang and Antonis Papachristodoulou. | We provide here the code that was used to model order reduce the networks in the paper 'A systematic, algorithmic methodology for model reduction of large-scale biochemical networks' by Yo-Cheng Chang and Antonis Papachristodoulou. | ||

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One zip file containing: | One zip file containing: | ||

− | The SIMULINK model: YGlyco_mdl.mdl | + | * The SIMULINK model: YGlyco_mdl.mdl |

− | The S-function: YGlyco_sfun.mdl | + | * The S-function: YGlyco_sfun.mdl |

− | The Parameters: YGlyco_para.m | + | * The Parameters: YGlyco_para.m |

− | The vector field: YGlyco_eqs.m | + | * The vector field: YGlyco_eqs.m |

− | The ODE function: YGlycoode.m | + | * The ODE function: YGlycoode.m |

− | + | * The reduction algorithm: YGlyco_reduction.m | |

− | The reduction algorithm: YGlyco_reduction.m | + | * The system coordinate change function: findtransform.m |

− | The system coordinate change function: findtransform.m | + | * The norm coordinate change function: getQ.m |

− | The norm coordinate change function: getQ.m | ||

=The EGFR-MAPK Pathway= | =The EGFR-MAPK Pathway= | ||

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One zip file containing: | One zip file containing: | ||

− | The SIMULINK model: EGFRMAPK_mdl.mdl | + | * The SIMULINK model: EGFRMAPK_mdl.mdl |

− | The S-function: EGFRMAPK_sfun.mdl | + | * The S-function: EGFRMAPK_sfun.mdl |

− | The Parameters: EGFRMAPK_para.m | + | * The Parameters: EGFRMAPK_para.m |

− | The total concentrations: EGFRMAPK_init.m | + | * The total concentrations: EGFRMAPK_init.m |

− | The ODE function: EGFRMAPKode.m | + | * The ODE function: EGFRMAPKode.m |

− | + | * The reduction algorithm: EGFR_reduction.m | |

− | The reduction algorithm: EGFR_reduction.m | + | * The system coordinate change function: findtransform.m |

− | The system coordinate change function: findtransform.m | + | * The norm coordinate change function: getQ.m |

− | The norm coordinate change function: getQ.m |

## Revision as of 12:10, 15 December 2008

We provide here the code that was used to model order reduce the networks in the paper 'A systematic, algorithmic methodology for model reduction of large-scale biochemical networks' by Yo-Cheng Chang and Antonis Papachristodoulou.

# The Yeast Glycolysis Pathway

One zip file containing:

- The SIMULINK model: YGlyco_mdl.mdl
- The S-function: YGlyco_sfun.mdl
- The Parameters: YGlyco_para.m
- The vector field: YGlyco_eqs.m
- The ODE function: YGlycoode.m
- The reduction algorithm: YGlyco_reduction.m
- The system coordinate change function: findtransform.m
- The norm coordinate change function: getQ.m

# The EGFR-MAPK Pathway

One zip file containing:

- The SIMULINK model: EGFRMAPK_mdl.mdl
- The S-function: EGFRMAPK_sfun.mdl
- The Parameters: EGFRMAPK_para.m
- The total concentrations: EGFRMAPK_init.m
- The ODE function: EGFRMAPKode.m
- The reduction algorithm: EGFR_reduction.m
- The system coordinate change function: findtransform.m
- The norm coordinate change function: getQ.m