Difference between revisions of "Modelreduction"
From SYSOS
| Line 3: | Line 3: | ||
=The Yeast Glycolysis Pathway= | =The Yeast Glycolysis Pathway= | ||
| − | One zip file containing: | + | One [http://www.eng.ox.ac.uk/~labap/YGlycomred.zip zip file] containing: |
* The SIMULINK model: YGlyco_mdl.mdl | * The SIMULINK model: YGlyco_mdl.mdl | ||
| Line 15: | Line 15: | ||
=The EGFR-MAPK Pathway= | =The EGFR-MAPK Pathway= | ||
| − | One zip file containing: | + | One [http://www.eng.ox.ac.uk/~labap/EGFRMAPKmred.zip zip file] containing: |
* The SIMULINK model: EGFRMAPK_mdl.mdl | * The SIMULINK model: EGFRMAPK_mdl.mdl | ||
Revision as of 12:15, 15 December 2008
We provide here the code that was used to model order reduce the networks in the paper 'A systematic, algorithmic methodology for model reduction of large-scale biochemical networks' by Yo-Cheng Chang and Antonis Papachristodoulou.
The Yeast Glycolysis Pathway
One zip file containing:
- The SIMULINK model: YGlyco_mdl.mdl
- The S-function: YGlyco_sfun.mdl
- The Parameters: YGlyco_para.m
- The Flux equations: YGlyco_eqs.m
- The reduction algorithm: YGlyco_reduction.m
- The system coordinate change function: findtransform.m
- The norm coordinate change function: getQ.m
The EGFR-MAPK Pathway
One zip file containing:
- The SIMULINK model: EGFRMAPK_mdl.mdl
- The S-function: EGFRMAPK_sfun.mdl
- The Parameters: EGFRMAPK_para.m
- The total concentrations: EGFRMAPK_init.m
- The ODE function: EGFRMAPKode.m
- The reduction algorithm: EGFR_reduction.m
- The system coordinate change function: findtransform.m
- The norm coordinate change function: getQ.m