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| − | '''Thomas P. Prescott'''
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| − | DPhil Candidate, University of Oxford
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| − | thomas.prescotteng.ox.ac.uk | |
| − | * [[Main_Page|SySOS Control Group]], Department of Engineering Science
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| − | * Life Sciences Interface Doctoral Training Centre
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| − | * [http://www.trinity.ox.ac.uk Trinity College]
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| − | = Background =
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| − | I came to Oxford in 2004, studying for an undergraduate Masters in Mathematics at Trinity College. After graduating in 2008, I spent two years working in the Operational Research team within the commercial division of [http://www.tuigroup.com/en/ Tui Travel UK & Ireland]. I returned to Oxford, and to Trinity, in 2010 to begin my DPhil ([http://www.ox.ac.uk/admissions/postgraduate_courses/course_guide/about_our_programmes.html i.e.] PhD) studies with the LSI Doctoral Training Centre funded by an EPSRC scholarship. After completing the first year's taught program, in October 2011 I began to study for my DPhil thesis, being supervised by [[User:Antonis|Antonis Papachristodoulou]] in the [[Main_Page|SySOS group]] in the Department of Engineering Science.
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| − | = Interests =
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| − | * Layered architecture of complex systems
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| − | * Mathematical and Systems Biology
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| − | * Synthetic Biology
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| − | * Networked, multi-scale models of dynamical systems
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| − | * Structured model reduction and error propagation
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| − | Additionally, past projects have been in:
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| − | * Community detection in networks of time series (with [http://people.maths.ox.ac.uk/porterm/ Mason Porter] and [http://users.ox.ac.uk/~mast3287/ Elizabeth Leicht])
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| − | * Decentralized congestion control in the Internet
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| − | My work as an OR consultant at Tui centred on:
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| − | * Yield/revenue management (specifically, using price-sensitive optimization)
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| − | * Search algorithms
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| − | = Publications =
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| − | == Journal Papers ==
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| − | # T. P. Prescott, [http://www.csb.ethz.ch/group/members/person-detail.html?persid=161944 M. Lang], & A. Papachristodoulou. ''Quantification of interactions between dynamic cellular network functionalities by cascaded layering.'' PLoS Computational Biology, 11(5):e1004235, 2015 [http://dx.doi.org/10.1371/journal.pcbi.1004235 DOI]
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| − | # T. P. Prescott & A. Papachristodoulou. ''Layered decomposition for the model order reduction of timescale separated biochemical reaction networks.'' Journal of Theoretical Biology, 356:113-122, 2014 [http://dx.doi.org/10.1016/j.jtbi.2014.04.007 DOI] [[Media:Prescott2014_JTB.pdf|PDF]]
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| − | # T. P. Prescott & A. Papachristodoulou. ''Guaranteed error bounds for structured complexity reduction of biochemical networks.'' Journal of Theoretical Biology, 304:172-182, 2012 [http://dx.doi.org/10.1016/j.jtbi.2012.04.002 DOI] [[Media:Prescott2012.pdf|PDF]]
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| − | == Peer Reviewed Conference Proceedings ==
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| − | # T. P. Prescott & [http://www.mit.edu/~gyorgy/ A. Gyorgy]. ''Bounding the effect of retroactivity in the presence of parameter uncertainty.'' Proceedings of the American Control Conference (ACC), Chicago IL, July 2015 (To appear)
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| − | # T. P. Prescott & A. Papachristodoulou. ''Structured storage functions for cascaded systems.'' Proceedings of the IEEE Conference on Decision and Control (CDC), Los Angeles CA, pp.5488-5493, December 2014 [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7040247 IEEExplore] [[Media:Prescott2014_CDC.pdf|PDF]]
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| − | # T. P. Prescott & A. Papachristodoulou. ''Synthetic Biology: A Control Engineering Perspective.'' Proceedings of the European Control Conference (ECC), Strasbourg, France, pp.1182-1186, June 2014 [http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6862638 IEEExplore] [[Media:PreP14_ECC14.pdf|PDF]]
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| − | # T. P. Prescott & A. Papachristodoulou. ''Signal propagation across layered biochemical networks.'' Proceedings of the American Control Conference (ACC), Portland OR, pp.3399-3404, June 2014 [http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6858808 IEEExplore] [[Media:Prescott2014_ACC.pdf|PDF]]
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| − | # T. P. Prescott & A. Papachristodoulou. ''Layering in networks: The case of biochemical systems.'' Proceedings of the American Control Conference (ACC), Washington D.C., pp.4544-4549, June 2013 [http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6580539 IEEExplore] [[Media:Prescott2013.pdf|PDF]]
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| − | = Code =
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| − | Any code associated with published research can be found [[/Code|here]].
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| − | = Teaching =
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| − | Teaching in Michaelmas (MT) and Hilary (HT) [http://www.ox.ac.uk/about_the_university/university_year/dates_of_term.html terms] at University of Oxford.
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| − | * Class tutor, Engineering Science intercollegiate classes
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| − | ** C10.3 Biosystem Modelling (HT2015)
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| − | * Demonstrator, [http://www.sbcdt.ox.ac.uk/ Synthetic Biology CDT]
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| − | ** Synthetic Circuit Design (HT2015)
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| − | ** Systems & Control Theory for Synthetic Biology (HT2015)
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| − | ** Introduction to Systems and Synthetic Biology (MT2014)
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| − | * Class tutor, Maths Institute intercollegiate classes
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| − | ** C6.2b Networks (HT2014)
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| − | * Teaching Assistant, Maths Institute intercollegiate classes
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| − | ** B5a Techniques of Applied Mathematics (MT2013)
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| − | ** B5b Applied PDEs (HT2013)
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| − | ** B8a Mathematical Biology (MT2012)
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| − | * Class tutor, Biochemistry/Biomedical Sciences
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| − | ** Mathematics for Biomedical Sciences Prelims (MT2012 - HT2014)
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