Difference between revisions of "Prescott"
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− | '''Thomas P. Prescott''' | + | '''Dr Thomas P. Prescott''' |
− | + | Post-Doctoral Research Assistant | |
+ | [[Main_Page|SySOS Control Group]], Department of Engineering Science | ||
+ | University of Oxford | ||
thomas.prescott | thomas.prescott | ||
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= Background = | = Background = | ||
− | I | + | I am currently a Post-Doctoral Research Assistant in Control Engineering with [[User:Antonis|Professor Antonis Papachristodoulou]], in the SySOS group at the Department of Engineering Science in the University of Oxford. As a student of Trinity College, University of Oxford, I received an MMath in Mathematics in 2008, and in 2015 I completed my DPhil in Engineering Science as part of the Life Sciences Interface Doctoral Training Centre, funded by an EPSRC scholarship. Between these two degrees, I spent two years in a major European tour operator as an Operational Research consultant. My thesis, supervised by Antonis Papachristodoulou, focused on decomposition and reduction techniques for large-scale ODE models, with applications to models used in Systems and Synthetic Biology. |
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= Interests = | = Interests = | ||
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= Publications = | = Publications = | ||
== Journal Papers == | == Journal Papers == | ||
+ | # T. P. Prescott & A. Papachristodoulou. ''Designing conservation relations in layered synthetic biomolecular networks.'' IEEE Transactions on Biomedical Circuits and Systems (Synthetic Biology Special Edition), 2015 (in press) | ||
# T. P. Prescott, [http://www.csb.ethz.ch/group/members/person-detail.html?persid=161944 M. Lang], & A. Papachristodoulou. ''Quantification of interactions between dynamic cellular network functionalities by cascaded layering.'' PLoS Computational Biology, 11(5):e1004235, 2015 [http://dx.doi.org/10.1371/journal.pcbi.1004235 DOI] | # T. P. Prescott, [http://www.csb.ethz.ch/group/members/person-detail.html?persid=161944 M. Lang], & A. Papachristodoulou. ''Quantification of interactions between dynamic cellular network functionalities by cascaded layering.'' PLoS Computational Biology, 11(5):e1004235, 2015 [http://dx.doi.org/10.1371/journal.pcbi.1004235 DOI] | ||
# T. P. Prescott & A. Papachristodoulou. ''Layered decomposition for the model order reduction of timescale separated biochemical reaction networks.'' Journal of Theoretical Biology, 356:113-122, 2014 [http://dx.doi.org/10.1016/j.jtbi.2014.04.007 DOI] [[Media:Prescott2014_JTB.pdf|PDF]] | # T. P. Prescott & A. Papachristodoulou. ''Layered decomposition for the model order reduction of timescale separated biochemical reaction networks.'' Journal of Theoretical Biology, 356:113-122, 2014 [http://dx.doi.org/10.1016/j.jtbi.2014.04.007 DOI] [[Media:Prescott2014_JTB.pdf|PDF]] | ||
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== Peer Reviewed Conference Proceedings == | == Peer Reviewed Conference Proceedings == | ||
− | # T. P. Prescott & [http://www.mit.edu/~gyorgy/ A. Gyorgy]. ''Bounding the effect of retroactivity in the presence of parameter uncertainty.'' Proceedings of the American Control Conference (ACC), Chicago IL, July 2015 | + | # T. P. Prescott & [http://www.mit.edu/~gyorgy/ A. Gyorgy]. ''Bounding the effect of retroactivity in the presence of parameter uncertainty.'' Proceedings of the American Control Conference (ACC), Chicago IL, pp.3120-3125, July 2015 |
# T. P. Prescott & A. Papachristodoulou. ''Structured storage functions for cascaded systems.'' Proceedings of the IEEE Conference on Decision and Control (CDC), Los Angeles CA, pp.5488-5493, December 2014 [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7040247 IEEExplore] [[Media:Prescott2014_CDC.pdf|PDF]] | # T. P. Prescott & A. Papachristodoulou. ''Structured storage functions for cascaded systems.'' Proceedings of the IEEE Conference on Decision and Control (CDC), Los Angeles CA, pp.5488-5493, December 2014 [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7040247 IEEExplore] [[Media:Prescott2014_CDC.pdf|PDF]] | ||
# T. P. Prescott & A. Papachristodoulou. ''Synthetic Biology: A Control Engineering Perspective.'' Proceedings of the European Control Conference (ECC), Strasbourg, France, pp.1182-1186, June 2014 [http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6862638 IEEExplore] [[Media:PreP14_ECC14.pdf|PDF]] | # T. P. Prescott & A. Papachristodoulou. ''Synthetic Biology: A Control Engineering Perspective.'' Proceedings of the European Control Conference (ECC), Strasbourg, France, pp.1182-1186, June 2014 [http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6862638 IEEExplore] [[Media:PreP14_ECC14.pdf|PDF]] |
Revision as of 16:26, 27 July 2015
Dr Thomas P. Prescott
Post-Doctoral Research Assistant SySOS Control Group, Department of Engineering Science University of Oxford
thomas.prescott
Background
I am currently a Post-Doctoral Research Assistant in Control Engineering with Professor Antonis Papachristodoulou, in the SySOS group at the Department of Engineering Science in the University of Oxford. As a student of Trinity College, University of Oxford, I received an MMath in Mathematics in 2008, and in 2015 I completed my DPhil in Engineering Science as part of the Life Sciences Interface Doctoral Training Centre, funded by an EPSRC scholarship. Between these two degrees, I spent two years in a major European tour operator as an Operational Research consultant. My thesis, supervised by Antonis Papachristodoulou, focused on decomposition and reduction techniques for large-scale ODE models, with applications to models used in Systems and Synthetic Biology.
Interests
- Layered architecture of complex systems
- Mathematical and Systems Biology
- Synthetic Biology
- Networked, multi-scale models of dynamical systems
- Structured model reduction and error propagation
Additionally, past projects have been in:
- Community detection in networks of time series (with Mason Porter and Elizabeth Leicht)
- Decentralized congestion control in the Internet
My work as an OR consultant at Tui centred on:
- Yield/revenue management (specifically, using price-sensitive optimization)
- Search algorithms
Publications
Journal Papers
- T. P. Prescott & A. Papachristodoulou. Designing conservation relations in layered synthetic biomolecular networks. IEEE Transactions on Biomedical Circuits and Systems (Synthetic Biology Special Edition), 2015 (in press)
- T. P. Prescott, M. Lang, & A. Papachristodoulou. Quantification of interactions between dynamic cellular network functionalities by cascaded layering. PLoS Computational Biology, 11(5):e1004235, 2015 DOI
- T. P. Prescott & A. Papachristodoulou. Layered decomposition for the model order reduction of timescale separated biochemical reaction networks. Journal of Theoretical Biology, 356:113-122, 2014 DOI PDF
- T. P. Prescott & A. Papachristodoulou. Guaranteed error bounds for structured complexity reduction of biochemical networks. Journal of Theoretical Biology, 304:172-182, 2012 DOI PDF
Peer Reviewed Conference Proceedings
- T. P. Prescott & A. Gyorgy. Bounding the effect of retroactivity in the presence of parameter uncertainty. Proceedings of the American Control Conference (ACC), Chicago IL, pp.3120-3125, July 2015
- T. P. Prescott & A. Papachristodoulou. Structured storage functions for cascaded systems. Proceedings of the IEEE Conference on Decision and Control (CDC), Los Angeles CA, pp.5488-5493, December 2014 IEEExplore PDF
- T. P. Prescott & A. Papachristodoulou. Synthetic Biology: A Control Engineering Perspective. Proceedings of the European Control Conference (ECC), Strasbourg, France, pp.1182-1186, June 2014 IEEExplore PDF
- T. P. Prescott & A. Papachristodoulou. Signal propagation across layered biochemical networks. Proceedings of the American Control Conference (ACC), Portland OR, pp.3399-3404, June 2014 IEEExplore PDF
- T. P. Prescott & A. Papachristodoulou. Layering in networks: The case of biochemical systems. Proceedings of the American Control Conference (ACC), Washington D.C., pp.4544-4549, June 2013 IEEExplore PDF
Code
Any code associated with published research can be found here.
Teaching
Teaching in Michaelmas (MT) and Hilary (HT) terms at University of Oxford.
- Class tutor, Engineering Science intercollegiate classes
- C10.3 Biosystem Modelling (HT2015)
- Demonstrator, Synthetic Biology CDT
- Synthetic Circuit Design (HT2015)
- Systems & Control Theory for Synthetic Biology (HT2015)
- Introduction to Systems and Synthetic Biology (MT2014)
- Class tutor, Maths Institute intercollegiate classes
- C6.2b Networks (HT2014)
- Teaching Assistant, Maths Institute intercollegiate classes
- B5a Techniques of Applied Mathematics (MT2013)
- B5b Applied PDEs (HT2013)
- B8a Mathematical Biology (MT2012)
- Class tutor, Biochemistry/Biomedical Sciences
- Mathematics for Biomedical Sciences Prelims (MT2012 - HT2014)